Publications
2026
Canavese, D., Ferreira, A., Kamm, L., & Quesada Rodriguez, A. (2026). Uncovering challenges of cybersecurity cross-regulation in EU legislation. Information and Software Technology, 193, 108033. https://doi.org/10.1016/j.infsof.2026.108033
Di Giorgio, Alessandro; Sobocinski, Pawel; Voorneveld, Niels (2026). Parametric iteration in resource theories. 34th EACSL Annual Conference on Computer Science Logic, CSL 2026, February 23–28, 2026, Paris, France. Ed. Guerrini, S.; König, B. Saarbrücken/Wadern: Schloss Dagstuhl , 29:1−29:23. (Leibniz International Proceedings in Informatics (LIPIcs); 363). DOI: 10.4230/LIPIcs.CSL.2026.29.
Dowerah, Sandipana; Kulkarni, Atharva; Kulkarni, Ajinkya; Tran, Hoan My; Kalda, Joonas; Fedorchenko, Artem; Fauve, Benoit; Lolive, Damien; Alumäe, Tanel; Magimai-Doss, Mathew (2026). Speech DF Arena: a leaderboard for speech deepfake detection models. IEEE Open Journal of Signal Processing, 7, 73−81. DOI: 10.1109/OJSP.2026.36524
Haug, M., Ilves, N., Umov, N., Šuvalov, H., Mooses, K., Tamm, S., Loorents, H., Oja, M., Reisberg, S., Vilo, J., & Kolde, R. (2026). CohortContrast: Enrichment-based methodology for identification of clinically relevant concepts in real-world data. Informatics in Medicine Unlocked, 65, 101806. https://doi.org/10.1016/j.imu.2026.101806
Järve, J., Aysel, H. I., Khajuria, T., & Kull, M. (2026). Feature evolution and migration during Vision Transformer training. arXiv. https://doi.org/10.48550/arXiv.2608.20134
Kalda, J., Baroudi, S., Lebourdais, M., Pagés, C., Marxer, R., Alumäe, T., & Bredin, H. (2026). Design choices for PixIT-based speaker-attributed ASR: Team ToTaTo at the NOTSOFAR-1 challenge. Computer Speech & Language, 95, 101824. https://doi.org/10.1016/j.csl.2025.101824
Kannukene, A., Põlluste, K., Lember, M., Oona, M., & Kalda, R. (2026). Associations of chronic disease and multimorbidity with healthcare utilization, mortality and adverse events in Estonia. Journal of Multimorbidity and Comorbidity, 16. https://doi.org/10.1177/26335565261471615
López-Pintado, Orlenys; Rosenbaum, Jannis; Dumas, Marlon (2025). Optimization of Activity Batching Policies in Business Processes. In: Lecture Notes in Computer Science. (397−414). Springer Science and Business Media Deutschland GmbH. (Lecture Notes in Computer Science; 16044). DOI: 10.1007/978-3-032-02867-9_24.
Milinkovic, B., & Aru, J. (2026). On biological and artificial consciousness: A case for biological computationalism. Neuroscience & Biobehavioral Reviews, 181, 106524. https://doi.org/10.1016/j.neubiorev.2025.106524
Pajusalu, M., Oja, M., Mooses, K., et al. (2026). Syrona: An open-source visual analytics tool for pairwise comparison of health datasets in OMOP CDM. BMC Medical Informatics and Decision Making. https://doi.org/10.1186/s12911-026-03790-w
Podziubanchuk, Bohdan; Olev, Aivo; Kong, Jiaming; Alumäe, Tanel (2026). Simultaneous speech-to-text translation web application for Estonian. The 19th Conference of the European Chapter of the Association for Computational Linguistics, EACL 2026, Proceedings of System Demonstrations, March 24-29, 2026, 3: Rabat, Morocco. Association for Computational Linguistics, 575−582. (ACL Anthology). DOI: 10.18653/v1/2026.eacl-demo.40.
Reisberg, S., Oja, M., Mooses, K., Tamm, S., Sild, A., Talvik, H.-A., Laur, S., Kolde, R., Vilo, J. (2026). Data resource profile: EST-Health-30. International Journal of Epidemiology, 55(4), dyag113. https://doi.org/10.1093/ije/dyag113
Sharma, N., Agarwal, N., & Sirts, K. (2026). Psycholinguistic profiles of cognitive distortions in Reddit data.´ Proceedings of the 11th Workshop on Computational Linguistics and Clinical Psychology (CLPsych 2026), 306–323.
Šuvalov, H., Umov, N., Malk, M., Haug, M., Laur, S., Oja, M., Tamm, S., Reisberg, S., Vilo, J., & Kolde, R. (2026). Extracting and classifying drug discontinuations from Estonian electronic health records: Development and validation study. Journal of Medical Internet Research, 28, e86183. https://doi.org/10.2196/86183
Tammet, T., Järv, P., & Draheim, D. (2026). Every pooling rule has its world: Matching probability combination rules to situations and stakes. arXiv. https://doi.org/10.48550/arXiv.2608.11275
2025
Agarwal, Navneet; Sirts, Kairit (2025). Exploratory Study into Relations between Cognitive Distortions and Emotional Appraisals. Proceedings of the 10th Workshop on Computational Linguistics and Clinical Psychology: CLPsych 2025, NAACL, Albuquerque, New Mexico. Association for Computational Linguistics (ACL), 127−139. DOI: 10.18653/v1/2025.clpsych-1.11.
Aru, J. (2025). Artificial Intelligence and the Internal Processes of Creativity. Journal of Creative Behavior. DOI: 10.1002/jocb.1530.
Brito, Eduardo; Shoush, Mahmoud; Tamm, Kristian; Etti, Paula; Kamm, Liina (2025). SynthGuard: Redefining Synthetic Data Generation with a Scalable and Privacy-Preserving Workflow Framework. In: Coppens, B., Volckaert, B., Naessens, V., De Sutter, B. (Ed.). Availability, Reliability and Security. ARES 2025. Lecture Notes in Computer Science Springer, Cham. (15995). DOI: 10.1007/978-3-032-00633-2_12.
Di Lavore, E., Román, M., & Sobociński, P. (2025). Partial Markov categories. arXiv. https://doi.org/10.48550/arXiv.2502.03477
Di Giorgio, A., Sobociński, P., & Voorneveld, N. F. W. (2025). Parametric iteration in resource theories. arXiv. https://doi.org/10.48550/arXiv.2510.23413
Dijk, Allard; Meier, Roland; Melella, Cosimo; Pihelgas, Mauno; Vaarandi, Risto; Lenders, Vincent (2025). Next Steps in Cyber Blue Team Automation—Leveraging the Power of LLMs. CyCon 2025. DOI: https://doi.org/10.23919/CyCon65856.2025.11103720
Di Lavore, E., Román, M., Sobociński, P., & Széles, M. (2025). Order in partial Markov categories. Electronic Notes in Theoretical Informatics and Computer Science (ENTICS). https://doi.org/10.46298/entics.16686
Gidon, Albert; Aru, Jaan; Larkum, Matthew E. (2025). Does neural computation feel like something? Frontiers in Neuroscience, 19, ARTN 1511972. DOI: 10.3389/fnins.2025.1511972.
Juul, Johan Mattias; Roberts, Andrew James; Hamad, Mohammad; Venables, Adrian; Ottis, Rain (2025). Applying machine learning for electronic warfare activity detection at a national scale. MILCOM 2025 – 2025 IEEE Military Communications Conference (MILCOM), October 6-10, 2025, Los Angeles, CA , USA. IEEE, 1−6. DOI: 10.1109/MILCOM64451.2025.11309949.
Román, M., & Sobociński, P. (2025). String diagrams for premonoidal categories. Logical Methods in Computer Science, 21(2), 9:1–9:20. https://lmcs.episciences.org/15593
Ruder, Deniss; Uusberg, Andero; Sirts, Kairit (2025). Assessing the Reliability and Validity of GPT-4 in Annotating Emotion Appraisal Ratings. Proceedings of the 10th Workshop on Computational Linguistics and Clinical Psychology: CLPsych 2025, Albuquerque, New Mexico, 3rd May 2025. Association for Computational Linguistics, 1−11. DOI: 10.18653/v1/2025.clpsych-1.1.
Tamberg, Karl; Bahsi, Hayretdin (2025). Harnessing large language models for software vulnerability detection: a comprehensive benchmarking study. IEEE Access, 13, 29698−29717. DOI: 10.1109/ACCESS.2025.3541146.
Tulver, K.; Kaup, K.K.; Aru, J. (2025). The road to Aha: A recipe for mental breakthroughs. Cognition, 257, 106081. DOI: 10.1016/j.cognition.2025.106081.
Vaarandi, Risto; Bahsi, Hayretdin (2025). Using large language models for template detection from security event logs. International Journal of Information Security, 24. DOI: 10.1007/s10207-025-01018-y
Zeng, Liangzhao; Benatallah, Boualem; Dumas, Marlon; Kalagnanam, Jayant; Ngu, Anne H. H. (2025). QoS-Aware Service Composition: A Retrospective. IEEE Transactions on Software Engineering, 51 (3), 836−841. DOI: 10.1109/TSE.2025.3533423.
2024
Allikivi, Mari-Liis; Järve, Joonas; Kull, Meelis (2024). Cautious Calibration in Binary Classification. In: European Conference on Artificial Intelligence (ECAI 2024). (1503−1510). IOS Press. (Frontiers in Artificial Intelligence and Applications). DOI: 10.3233/FAIA240654.
Ballhausen, Hendrik; Corradini, Stefanie; Belka, Claus; Bogdanov, Dan; Boldrini, Luca; Bono, Francesco; Goelz, Christian; Landry, Guillaume; Panza, Giulia; Parodi, Katia; Talviste, Riivo; Tran, Huong Elena; Gambacorta, Maria Antonietta; Marschner, Sebastian (2024). Privacy-friendly evaluation of patient data with secure multiparty computation in a European pilot study. Npj Digital Medicine, 7 (1), 280. DOI: 10.1038/s41746-024-01293-4.
Bogdanov, Dan; Etti, Paula; Kamm, Liina; Stomakhin, Fedor (2024). Artificial Intelligence System Risk Management Methodology Based on Generalized Blueprints. 2024 16th International Conference on Cyber Conflict: Over the Horizon (CyCon): 16th International Conference on Cyber Conflict: Over the Horizon, Tallinn, Estonia, 28-31 May 2024. Ed. C. Kwan, L. Lindström, D. Giovannelli, K. Podiņš, D. Štrucl. IEEE, 123−140. DOI: 10.23919/CyCon62501.2024.10685644.
Domnich, M., Vicente, R. (2024). Enhancing Counterfactual Explanation Search with Diffusion Distance and Directional Coherence. In: Longo, L., Lapuschkin, S., Seifert, C. (eds) Explainable Artificial Intelligence. xAI 2024. Communications in Computer and Information Science, vol 2155. Springer, Cham. https://doi.org/10.1007/978-3-031-63800-8_4
Gogioso, S., & Sobociński, P. (2024). A graphical calculus for conditional independence. Polymath Journal, 2(6). https://polyjmath.org/volumes/polyjmath-2-6.pdf
Gopnarayan, M.N.; Aru, J.; Gluth, S. (2024). From DDMs to DNNs: Using Process Data and Models of Decision Making to Improve Human–AI Interactions. Decision, 11 (4), 468−480. DOI: 10.1037/dec0000239.
Kalda, Joonas; Alumäe, Tanel; Lebourdais, Martin; Bredin, Hervé; Baroudi, Séverin; Marxer, Ricard (2024). TalTech-IRIT-LIS speaker and language diarization systems for DISPLACE 2024. Interspeech 2024, 1-5 September 2024, Kos, Greece. ISCA, 1635−1639. DOI: 10.21437/Interspeech.2024-2462
Komisarenko, Viacheslav; Kull, Meelis (2024). Improving Calibration by Relating Focal Loss, Temperature Scaling, and Properness. In: European Conference on Artificial Intelligence (ECAI 2024). (1535−1542). IOS Press. (Frontiers in Artificial Intelligence and Applications). DOI: 10.3233/FAIA240658.
Lopez-Pintado, Orlenys; Murashko, Serhii; Dumas, Marlon (2024). Discovery and Simulation of Data-Aware Business Processes. 6th International Conference on Process Mining ICPM: 6th International Conference on Process Mining (ICPM), OCT 14-18, 2024, Lyngby, Denmark. Ed. Lu, X.; Pufahl, L.; Song, M. New York: IEEE, 105−112. DOI: 10.1109/ICPM63005.2024.10680675.
Rätsep, Liisa; Lellep, Rasmus; Fishel, Mark (2024). Enabling Conversational Speech Synthesis using Noisy Spontaneous Data. In: Proc. Interspeech 2024. (4923−4927). ISCA. DOI: 10.21437/Interspeech.2024-2403.
Shahroudi, Novin; Lepson, Mihkel; Kull, Meelis (2024). Evaluation of Trajectory Distribution Predictions with Energy Score. In: Proceedings of the 41st International Conference on Machine Learning (ICML 2024). (44322−44341). PMLR.
Shvetsov, Dmytro; Ariva, Joonas; Domnich, Marharyta; Vicente, Raul; Fishman, Dmytro (2024). COIN: Counterfactual Inpainting for Weakly Supervised Semantic Segmentation for Medical Images. Explainable Artificial Intelligence, Pt Iii, Xai 2024: 2nd World Conference on Explainable Artificial Intelligence (xAI), JUL 17-19, 2024, Valletta, MALTA. Ed. Longo, L.; Lapuschkin, S.; Seifert, C. Cham: Springer International Publishing Ag, 39−59. (Communications in Computer and Information Science; 2155). DOI: 10.1007/978-3-031-63800-8_3.